PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF051200110CFD_t1
Common NameTRAES_3BF051200110CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 294aa    MW: 31261.9 Da    PI: 7.8909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF051200110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.4e-26122183159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC + k+v+r++ dp +++++Y+g+H++ 
  TRAES3BF051200110CFD_t1 122 LDDGISWRKYGQKDILGAKYPRAYFRCTHRhtqGCYASKQVQRAHGDPLLFDVVYHGNHTCA 183
                              58***************************98999**************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.2E-27109183IPR003657WRKY domain
SuperFamilySSF1182902.35E-24116183IPR003657WRKY domain
PROSITE profilePS5081121.138117180IPR003657WRKY domain
SMARTSM007746.0E-36122184IPR003657WRKY domain
PfamPF031062.0E-24123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEERCALATE LAQVLDTVRQ LEAHMGVKGG ADGGETCRTL VSSMRSSVDR SIHIAMSSCC  60
VVLGAPESPP SAGGSPRSGG SDQAADSPCR GAHAAGQSKK RKTQPKWSTQ VRVNSVEDVG  120
PLDDGISWRK YGQKDILGAK YPRAYFRCTH RHTQGCYASK QVQRAHGDPL LFDVVYHGNH  180
TCAQGKHYNS QRPQPVASGE HRQPQPAGGQ ERISVGLKTQ GCAPGVAAPF SFPSKQAGAD  240
TGSDFQAGCA TTAAPFMSPA TSECKASTTE SPMGDMEFML QLADADFLDN SRYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-13113181873Probable WRKY transcription factor 4
2lex_A6e-13113181873Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274010.0KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566949.11e-119PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A077RQT30.0A0A077RQT3_WHEAT; Uncharacterized protein
STRINGMLOC_44455.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-38WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]